Egg Muffin Breakfast – Keto Low-Carb Cups Recipe
If you are on the lookout for a quick, satisfying breakfast that perfectly fits your low-carb lifestyle, these Egg Muffin Breakfast – Keto Low-Carb Cups are about to become your new favorite morning treat. Packed with savory ham, melty cheddar, and a burst of fresh veggies, they are simple to make yet deliver layers of flavor and texture. Whether you eat them hot from the oven or grab a couple on the go, these cups offer convenience without compromising taste or nutrition. Let’s dive into why they’re a total game-changer for anyone embracing keto breakfasts.

Ingredients You’ll Need
This recipe calls for a handful of straightforward, everyday ingredients that come together beautifully to create a balanced, flavorful dish. Each component plays an important role, from the protein-rich eggs to the fresh crunch of green bell peppers and the gooey goodness of cheddar cheese.
- 5 large eggs: The star of the dish providing structure, protein, and richness.
- 1/4 lb (125g) cooked ham, diced: Adds savory depth and a satisfying meaty bite.
- 1 cup grated cheddar cheese: Brings creamy texture and a sharp, tangy flavor that melts beautifully.
- 1 tomato, seeded and diced: Offers a juicy, fresh pop and balances the savory elements.
- 1/2 green bell pepper, diced: Adds crunch and a subtle sweetness, contributing vibrant color.
- 1 scallion, sliced: Infuses a mild onion flavor that lifts the overall taste.
- Salt and freshly cracked pepper, to taste: Essential seasonings to enhance all the flavors.
- 1/2 teaspoon Italian seasoning: Optional but adds herby warmth and depth.
- 1/2 teaspoon crushed chili pepper flakes: Optional for a gentle kick that wakes up your palate.
How to Make Egg Muffin Breakfast – Keto Low-Carb Cups
Step 1: Prepare Your Oven and Pan
Start by preheating your oven to 400°F (200°C) so it’s ready to go when you finish mixing your ingredients. Grease a 6-count muffin pan with oil or non-stick spray—this little step prevents sticking and ensures your egg cups pop out effortlessly every time.
Step 2: Whisk the Eggs and Seasonings
In a large bowl, crack all five eggs and whisk them until beautifully combined. Season generously with salt and freshly cracked black pepper to bring out the natural flavors. A well-seasoned egg base is key to making these cups irresistibly tasty.
Step 3: Fold in Your Mix-Ins
Add the diced tomato, green bell pepper, ham, sliced scallion, grated cheddar, and if you’re feeling adventurous, sprinkle in the Italian seasoning and red chili flakes. Stir everything until your ingredients are evenly distributed, ensuring each egg cup is bursting with flavor and color.
Step 4: Fill and Bake
Divide the mixture evenly among the muffin cups, filling each about two-thirds full. For extra cheesy and meaty cups, top them with a little more ham and cheese before popping the pan into the oven. Bake for 12 to 15 minutes, or until the eggs are just set and lightly golden on top.
Step 5: Cool and Enjoy
Let your Egg Muffin Breakfast – Keto Low-Carb Cups cool slightly before removing from the pan. They’re perfect warm from the oven, but also delicious eaten cold—making them a versatile option for busy mornings.
How to Serve Egg Muffin Breakfast – Keto Low-Carb Cups

Garnishes
A sprinkle of fresh herbs like parsley or chives adds a fragrant, colorful touch to your egg cups. You might also enjoy them with a dollop of sour cream or a few shreds of extra cheese on top to elevate the presentation and flavor.
Side Dishes
These keto low-carb cups pair wonderfully with a simple side salad dressed with olive oil and lemon for a refreshing contrast. Or consider throwing together some sautéed spinach or avocado slices for a creamy, nutrient-packed accompaniment.
Creative Ways to Present
For brunches or meal-prep giveaways, serve your egg cups in mini muffin liners for easy handling. You can also stack a couple with a leafy green wrap or even slice them up and stuff inside a low-carb tortilla for a handheld breakfast wrap sensation.
Make Ahead and Storage
Storing Leftovers
Store your leftover Egg Muffin Breakfast – Keto Low-Carb Cups in an airtight container in the refrigerator for up to 4 days. They’ll keep their flavor and texture nicely, making for a wonderfully convenient grab-and-go meal.
Freezing
These egg cups freeze beautifully. Simply place cooled cups in a freezer-safe container or ziplock bag with parchment paper between layers and freeze for up to 3 months. Make a double batch to save time and effort!
Reheating
Reheat your frozen or refrigerated cups by microwaving on medium power for 30 to 60 seconds until warmed through. You can also reheat in a toaster oven or conventional oven at 350°F until heated without drying out the eggs.
FAQs
Can I use other meats besides ham in the Egg Muffin Breakfast – Keto Low-Carb Cups?
Absolutely! These cups are highly adaptable; try cooked bacon, sausage, or even shredded chicken to switch up the flavors while keeping it keto-friendly.
Are these egg muffins suitable for meal prep?
Definitely. They store well in the fridge and freezer, making them perfect to prepare in advance for busy mornings or quick snacks throughout the week.
Can I make this recipe dairy-free?
Yes! Simply omit the cheese or swap it for a dairy-free alternative, and you’ll still enjoy a delicious, protein-packed breakfast.
What if I don’t have Italian seasoning or chili flakes?
No worries! You can leave those out or add other herbs and spices you love, such as paprika, garlic powder, or even cumin for a unique twist.
Can I use frozen vegetables instead of fresh?
Fresh vegetables work best to avoid excess moisture, but if you use frozen, be sure to thaw and drain them thoroughly before adding to prevent soggy muffins.
Final Thoughts
These Egg Muffin Breakfast – Keto Low-Carb Cups are more than just a recipe; they’re a game-changer for anyone craving a nourishing, flavorful breakfast that fits perfectly into a low-carb lifestyle. With simple ingredients, minimal prep, and endless customization, they’re sure to become a treasured staple in your kitchen. Give them a try—you’ll wonder how you ever started your day without them!
PrintEgg Muffin Breakfast – Keto Low-Carb Cups Recipe
These Egg Muffin Breakfast cups are a delicious and easy keto-friendly low-carb option perfect for busy mornings. Packed with eggs, ham, cheese, and fresh vegetables, they’re nutritious, customizable, and can be enjoyed hot or cold.
- Prep Time: 10 minutes
- Cook Time: 15 minutes
- Total Time: 25 minutes
- Yield: 6 muffins 1x
- Category: Breakfast
- Method: Baking
- Cuisine: American
- Diet: Low Carb
Ingredients
Egg Mixture
- 5 large eggs
- Salt and fresh cracked pepper, to taste
- 1/2 teaspoon Italian seasoning (optional)
- 1/2 teaspoon crushed chili pepper flakes (optional)
Fillings
- 1/4 lb (125g) cooked ham, diced
- 1 cup grated cheddar cheese (or any cheese you prefer)
- 1 tomato, seeded and diced
- 1/2 green bell pepper, diced
- 1 scallion, sliced
Additional
- Oil or non-stick cooking spray, for greasing muffin pan
Instructions
- Preheat and Prepare Pan: Preheat your oven to 400°F (200°C). Grease a 6-count muffin pan well using oil or non-stick cooking spray to ensure the muffins do not stick. Set the pan aside.
- Mix Eggs and Seasonings: In a large mixing bowl, crack the 5 eggs. Whisk thoroughly along with salt and freshly cracked black pepper to taste, along with Italian seasoning and crushed chili flakes if using. This base will give flavor and structure to your muffins.
- Add Fillings: Stir in the diced tomato, green bell pepper, cooked ham, sliced scallion, and grated cheddar cheese into the egg mixture. Mix everything evenly to ensure every muffin cup gets balanced fillings.
- Fill Muffin Cups: Divide the mixture evenly into the prepared muffin pan, filling each cup about two-thirds full. If desired, sprinkle extra diced ham and cheese on top for added flavor and a cheesy crust.
- Bake: Place the muffin pan into the preheated oven and bake for 12 to 15 minutes, or until the egg cups are fully set and lightly golden on top. The exact baking time may vary slightly depending on your oven.
- Cool and Serve: Remove the muffins from oven and let them cool slightly in the pan before serving. Enjoy them warm straight from the oven or allow them to cool completely for a convenient cold breakfast option.
Notes
- This recipe is highly versatile; feel free to customize with any leftover vegetables, different cheeses, or meats you have on hand.
- For extra moisture, you can add a splash of milk or cream to the egg mixture if desired, though this may affect some keto counts.
- To keep muffins low carb and keto-friendly, avoid adding starchy vegetables or bread crumbs.
- These muffins store well in the refrigerator for up to 4 days and can be reheated or eaten cold.
- Freeze leftovers individually wrapped for up to 1 month for a quick, grab-and-go breakfast.
Nutrition
- Serving Size: 1 muffin
- Calories: 180 kcal
- Sugar: 2 g
- Sodium: 380 mg
- Fat: 13 g
- Saturated Fat: 6 g
- Unsaturated Fat: 5 g
- Trans Fat: 0 g
- Carbohydrates: 3 g
- Fiber: 1 g
- Protein: 14 g
- Cholesterol: 210 mg
Keywords: egg muffins, keto breakfast, low carb breakfast, breakfast cups, ham and cheese muffins, easy keto recipe