Apple Crisp Cookie Cups Recipe
If you adore the cozy flavors of fall and enjoy bite-sized treats that melt in your mouth, you are absolutely going to fall head over heels for these Apple Crisp Cookie Cups. This delightful twist on a classic apple crisp marries a buttery, chewy oatmeal cookie base shaped perfectly into cups, holding a luscious, warmly spiced apple filling. The Apple Crisp Cookie Cups deliver a symphony of textures and flavors all in one hand-held delight—think crisp apples infused with cinnamon and nutmeg nestled inside a golden, tender cookie shell. It’s the perfect comfort dessert to share with friends or savor on your own with a cup of tea.

Ingredients You’ll Need
These Apple Crisp Cookie Cups come together with simple, pantry-friendly ingredients that pack big flavor and texture. Each one plays an essential role—from the tangy Granny Smith apples to the cinnamon-spiced cookie dough and creamy butter, creating a balance of sweetness, spice, and richness.
- Granny Smith apples: Tart and firm, these apples hold their shape beautifully when cooked and provide that classic apple crisp tang.
- Lemon juice: Adds brightness to the apple filling while preventing browning during prep.
- Light brown sugar: Infuses both the filling and cookie dough with deep molasses notes and moisture.
- Granulated sugar: Balances sweetness and helps with the structure of the dough and filling.
- Cornstarch: Thickens the apple filling to the perfect consistency without being gummy.
- Cinnamon and nutmeg: Warming spices that bring the quintessential apple crisp aroma and flavor.
- All-purpose flour: The sturdy base of the cookie cups, giving them structure and tenderness.
- Baking soda: Leavens the cookie dough for a light crumb.
- Sea salt: Enhances all the other flavors and cuts through the sweetness.
- Unsalted butter: Creates richness and helps achieve that tender, melt-in-your-mouth cookie texture.
- Eggs: Bind the dough and add moisture.
- Vanilla extract: Adds wonderful depth and complements the spices perfectly.
- Rolled oats: Adds a chewy texture and rustic feel to the cookie cups that perfectly pairs with the soft apples.
- Powdered sugar and water: Optional ingredients to make a simple glaze to drizzle on top for an extra touch of sweetness and shine.
How to Make Apple Crisp Cookie Cups
Step 1: Prepare the Apple Pie Filling
Start by tossing your peeled, diced Granny Smith apples with lemon juice; this brightens the fruit and keeps it from turning brown. In a saucepan, combine your sugars, cornstarch, and spices, then stir in water and bring the mixture to a boil. Once boiling, add the apples back in and simmer gently until they’re tender and perfectly softened, about 10 to 15 minutes. Then set the filling aside to cool completely; this will intensify the flavors and thicken the mixture for the best filling texture.
Step 2: Mix the Oatmeal Cookie Dough
While your apple filling cools, whisk together the dry ingredients—flour, cinnamon, baking soda, and salt—in a separate bowl. In your mixer, beat the softened butter with both light brown and granulated sugars until fluffy and pale, which takes about 3 minutes. Then add the eggs one at a time, beating well after each to maintain that light texture, followed by a splash of vanilla extract for richness. Gradually incorporate the dry mix at low speed, making sure everything melds beautifully, then fold in the oats for that delightful chewy bite.
Step 3: Shape the Cookie Cups
Now it’s time to get hands-on. Spray two regular muffin tins with cooking spray to prevent sticking. Using a large cookie scoop (around 3 tablespoons), portion the dough into each muffin cup. Then press the dough up the sides, forming little cups that will cradle the luscious apple filling. This step is key to achieving the perfect structure, so ensure the walls are firm but not too thick.
Step 4: Bake and Mold the Cups
Pop your muffin tins into a preheated 350°F oven and bake for about 15 minutes. You’ll know they’re ready when they’re lightly browned and mostly set, but still pliable enough to shape. As soon as they’re out of the oven, use the bottom of a small jar or a sturdy container to press down the center firmly to create a deep well—the perfect little nest for the apple filling. Allow the cookie cups to cool in the pans for 15 minutes before transferring to a wire rack to cool completely and set their shape.
Step 5: Assemble Your Apple Crisp Cookie Cups
Once cooled, fill each cookie cup with the luscious apple pie filling using a tablespoon. For an extra sweet finishing touch, drizzle the optional powdered sugar glaze over the tops. This final step elevates the look and adds a slight crunch contrast to the soft apples and tender cookie cups.
How to Serve Apple Crisp Cookie Cups

Garnishes
You can dress these Apple Crisp Cookie Cups up any way you like, but a scoop of vanilla ice cream or a dollop of freshly whipped cream instantly transforms them into an unbeatable dessert. Sprinkle on some extra cinnamon or a handful of chopped toasted pecans for added crunch and flavor contrast that’s simply divine.
Side Dishes
Serve these cookie cups alongside warm beverages like chai tea, coffee, or even a hot toddy for cozy evenings. They also pair wonderfully with simple salad greens dressed lightly in maple vinaigrette if you want a sweet treat after a balanced meal.
Creative Ways to Present
Don’t stop at muffin tins! For parties, arrange your Apple Crisp Cookie Cups on a rustic wooden board with small bowls of cinnamon sugar, extra glaze, and fresh apple slices for an interactive dessert spread. You can also pop a toothpick in each cup to convert them into charming mini dessert bites perfect for gatherings.
Make Ahead and Storage
Storing Leftovers
Leftover Apple Crisp Cookie Cups can be stored comfortably in an airtight container at room temperature for up to 2 days or refrigerated for up to 4 days. Keeping them covered well helps maintain the cookie’s chewy texture and keeps the apple filling fresh and flavorful.
Freezing
If you want to extend their shelf life, these cookie cups freeze beautifully. Assemble the cookie shells without the filling and freeze them in a single layer. Once frozen, transfer to a freezer-safe bag. You can freeze the apple filling separately in a sealed container. Thaw both in the refrigerator before reheating and assembling.
Reheating
Warm your Apple Crisp Cookie Cups in the oven at 325°F for about 10 minutes, or until heated through but not dried out. Avoid the microwave if possible, as it can make the cookie cups soggy. Reheat the apple filling separately on the stove and spoon back into the warmed cookie cups before serving.
FAQs
Can I use a different type of apple for the filling?
Absolutely! While Granny Smith apples offer the perfect balance of tartness and firmness, you can substitute with Honeycrisp, Fuji, or Braeburn apples depending on your preference. Just keep in mind that softer apples may cook down faster and release more juice.
Is it possible to make the cookie cups gluten-free?
Yes, you can swap the all-purpose flour for a gluten-free flour blend suitable for baking. Be sure to check that your baking soda and oats are certified gluten-free too, for the best results.
Can these be made vegan?
Yes! Replace the butter with a plant-based margarine and use flax eggs or another egg substitute. The texture might be slightly different but still deliciously satisfying.
How long do Apple Crisp Cookie Cups keep fresh?
When stored properly in an airtight container, they’re best enjoyed within 2 to 4 days. The cookie cups maintain their chewy texture longest when refrigerated.
What’s the best way to prevent cookie cups from sticking to the muffin tin?
Generously spraying your muffin tin with cooking spray or using silicone muffin liners helps. You can also lightly flour the tins after greasing for extra insurance.
Final Thoughts
These Apple Crisp Cookie Cups are a charming and delicious way to enjoy a classic dessert in a fun new form. Perfect for sharing or treating yourself, they capture the essence of autumn with every bite. I can’t wait for you to try making them in your kitchen—they’re bound to become a treasured favorite, just like they are in mine.
PrintApple Crisp Cookie Cups Recipe
Delight in these Apple Crisp Cookie Cups that combine the tender, warm flavors of classic apple pie filling with a chewy oatmeal cookie cup. Perfect for fall desserts or anytime you crave a comforting treat, these cups are easy to assemble and bring festive autumn spices into every bite.
- Prep Time: 25 minutes
- Cook Time: 20 minutes
- Total Time: 45 minutes
- Yield: 24 cookie cups 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Apple Pie Filling
- 6 cups Granny Smith apples (4–5 apples, peeled and chopped)
- 1 Tbsp lemon juice
- 1/2 cup light brown sugar (packed)
- 1/2 cup granulated sugar
- 1/4 cup cornstarch
- 1 tsp ground cinnamon
- Pinch ground nutmeg
- Pinch salt
- 2 cups water
Oatmeal Cookie Cups
- 1 1/2 cups all-purpose flour
- 1 tsp baking soda
- 1 tsp ground cinnamon
- 1/2 tsp sea salt
- 1 cup unsalted butter (room temperature)
- 1 cup light brown sugar (packed)
- 1/4 cup granulated sugar
- 2 large eggs (room temperature)
- 2 tsp vanilla extract
- 3 cups rolled oats
Sugar Glaze (optional)
- 1 cup powdered sugar
- 1 Tbsp water
Instructions
- Prepare Apple Pie Filling: Toss together the peeled and chopped Granny Smith apples with lemon juice in a medium bowl and set aside to prevent browning.
- Make Filling Sauce: In a medium saucepan, combine light brown sugar, granulated sugar, cornstarch, ground cinnamon, nutmeg, and salt. Pour in 2 cups of water and cook over medium heat, stirring until boiling. Allow to boil for 2 minutes to thicken.
- Add Apples and Simmer: Add the apple mixture back into the saucepan. Bring to a boil again, then reduce heat and simmer until apples are tender, about 10-15 minutes. Remove from heat and let the filling cool completely.
- Mix Dry Ingredients for Cookies: In a medium bowl, whisk together all-purpose flour, baking soda, cinnamon, and sea salt. Set aside.
- Cream Butter and Sugars: Using an electric mixer, beat unsalted butter, brown sugar, and granulated sugar on medium-high speed for about 3 minutes until pale and fluffy.
- Add Eggs and Vanilla: Add eggs one at a time, beating well after each addition. Then beat on high speed for 1 minute before mixing in the vanilla extract.
- Combine Dry Ingredients and Oats: Turn mixer to low and gradually add the flour mixture, mixing until just combined. Stir in rolled oats until evenly distributed without overmixing.
- Form Cookie Cups: Spray two standard muffin tins with cooking spray. Using a large cookie scoop (about 3 tablespoons), scoop dough into each muffin cup. Press dough down and push up the sides with fingers or the back of a spoon to form cups.
- Bake: Preheat the oven to 350°F (175°C). Bake the cookie cups for approximately 15 minutes or until they are golden brown and mostly set.
- Shape Cups While Warm: Immediately after removing from oven, if needed, press each cookie cup gently in the center with a small jar or container to maintain the cup shape. Cool in pan for 15 minutes, then transfer to a wire rack to cool completely.
- Assemble and Serve: Once cooled, fill each cookie cup with the prepared apple pie filling using a tablespoon. If desired, drizzle with a simple sugar glaze made by mixing powdered sugar with water.
Notes
- Ensure the apples are cool before filling the cookie cups to prevent them from becoming soggy.
- You can substitute Granny Smith apples for a sweeter variety if preferred, but tart apples work best to balance the sweetness.
- For a dairy-free option, substitute butter with vegan butter or margarine.
- Store the assembled cookie cups in an airtight container in the refrigerator for up to 3 days.
- Reheat briefly in a microwave for a warm dessert experience.
Nutrition
- Serving Size: 1 cookie cup
- Calories: 220
- Sugar: 18g
- Sodium: 110mg
- Fat: 9g
- Saturated Fat: 5g
- Unsaturated Fat: 3g
- Trans Fat: 0g
- Carbohydrates: 33g
- Fiber: 3g
- Protein: 3g
- Cholesterol: 40mg
Keywords: apple crisp cookie cups, apple dessert cups, oatmeal cookie cups, fall desserts, apple pie filling cookie